TreeMig.f90 File Reference

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Functions/Subroutines
subroutine	treemig (doparallel)
	TreeMig (TREE MIGration simulator)

Function/Subroutine Documentation

treemig()

subroutine treemig

(

logical, intent(in)

doparallel

)

TreeMig (TREE MIGration simulator)

---

Main SUBROUTINE for the simulation of tree migration.

1. Settings, parameters and data are read in, the output files are prepared
   
2. Inoculation: The simulation is run without dispersal with ubiquitous seed input
3. Migration simulation: The simulation is run with dispersal
   
4. Cleaning up.

• USE: FileListModule, NetcdfTMModule, All_par
  
• IN:

  • Parameters

    doParallel

    flag whether parallel computing

• OUT:
  
  • via FileListModule
    
    • Bioclimate_File
  • via All_par
    
    • all (except facvar) read in ReadControlpars called from ReadControlParsAndInitFiles
    • integer: numyrs : number of simulation years
    • integer: inoculationTime: duration of initial simulation with seeds everywhere present
    • integer: maxlat, maxlon : number of rows/cols of simulation domain,
      
    • integer: startlatStart, startlatEnd, startlonStart, startlonEnd: position in relative coordinates of inoculation cells (rectangle)
    • REAL: facvar, fcvarInit, fcvarDyn : factor of variability for light freq. dynamics, used/Initialisation/Simulation
      
    • LOGICAL: readStateFile: flag whether statevector is read in
      
    • LOGICAL: doFFT: flag whether dispersal is computed with FFT
• CALLS:
  
  • ReadControlParsAndInitFiles in FileListModule.f90
    
  • GetSpc in GetSpc.f90
    
  • InitAndSetConstHeightClProps in InitAndSetConstHeightClProps.f90
  • PrepareNetcdfOutput in PrepareNetcdfOutput.f90 PrepareOutput in PrepareOutput.f90
  • PrepareBioclimInput in PrepareBioclimInput.f90
  • ReadState in ReadState.f90
  • TimeLoop in TimeLoop.f90
    
• CALLS support routines:
  • AllocateAreas in AllocateAreasAndKernels.f90
    
  • LogInfo in Logger.f90
  • CloseOutputFiles in PrepareOutput.f90
  • closeFile in FileHandlingModule.f90
  • StopLogger in Logger.f90
• CALLED FROM:
  • StartTreeMig in StartTreeMig.f90

Definition at line 45 of file TreeMig.f90.