netcdftmmodule Module Reference

Functions/Subroutines
subroutine	preparenetcdfoutput (nspc)
	PrepareNetcdfOutput
subroutine	initncvar (var, numdims, ncdims, limits)

Function/Subroutine Documentation

initncvar()

subroutine netcdftmmodule::initncvar	(	type(ncvar), intent(inout)	var,
		integer, intent(in)	numdims,
		integer, dimension(:), intent(in)	ncdims,
		integer, dimension(:), intent(in)	limits )

Defines a Netcdf variable, allocates the array for it and fills it with a standard fillvalue.

• USE: FileListModule, netcdf, LoggerModule, iso_fortran_env, ieee_arithmetic
• IN:
  

  • Parameters

    var	variable to be inititalized
    numDims	number of dimensions of this variable
    NCDims	dimensions of this variable
    limits	on each dimension of this variable

• CALLS support routines:
  • allocate from Fortran
  • m_check in PrepareNetcdfOutput.f90
  • nf90_def_var, nf90_put_att in netcdf
  • LogError in LoggerModule.f90
  • CheckAlloc in AllocateAreaAndKernels.f90
• CALLED from:
  • PrepareNetcdfOutput in PrepareNetcdfOutput.f90

Definition at line 290 of file PrepareNetcdfOutput.f90.

preparenetcdfoutput()

subroutine netcdftmmodule::preparenetcdfoutput

(

integer, intent(in)

nspc

)

PrepareNetcdfOutput

---

prepares a netcdf file for output

1. the file is created
2. global attributes of the file are defined
3. time, x,y, species "axis" are defined with their attributes
4. the different output variables are defined,allocated and initialized
5. the x, y and year (and maybe also height and light class) values are added to the corresponding variables for netcdf lib see https://docs.unidata.ucar.edu/netcdf-fortran/current/f90-use-of-the-netcdf-library.html.

• USE: FileListModule, netcdf, All_par
• IN:
  

  • Parameters

    nspc	: number of species

  • FROM All_par:
    • experimentID :character(len=:), allocatable: identifier for output of experiment
    • unitOfSpatialData : REAL : unit of bioclim and stockability data in meters
    • latRealStart, lonRealStart : REAL : coordinates of corner of simulation rectangle in REAL coordinates
    • maxlat, maxlon : INTEGER : chosen number of rows, columns of simulation area; relative coordinates
    • cellSideLength : REAL : Side-lenght of grid cell [=..] !>DSP
    • numyrs : INTEGER : number of years to be simulated
    • simustartyear : INTEGER : start year of simulation in real years
    • writeOutput : TYPE(wrOutp) : structure of logicals for the different output variables, to be set true or false
    • maxhc, maxlc : INTEGER : max. number of height classes (0-maxhc) and light classes (1-maxlc)
    • reportIntervals : INTEGER, dimension (10, 3) : report intervals (col 1), their start (col2) and end (col3) (years)
    • nReportIntervals : INTEGER : number of report intervals
    • spec(maxspc) : TYPE(SpecProperties) : species properties; here a.o. all species parameters are put to spec
  • FROM FileListModule:
    • NC_FILE_NAME: character(len=:), allocatable : name of netcdf file
• OUT:
  • via FileListModule:
    • NC_FILE_ID: INTEGER : id of netcdf file
    • BioDiv_NC,Biomass_NC, & Number_NC, Seed_NC, Ingrowth_NC, NPP_NC, BasalArea_NC,& Antagonist_NC, Pollen_NC, LAI_NC, Light_NC : TYPE(NCVar) : output variables in netcdf format
• CALLS support routines:
  • InitNCVar in PrepareNetcdfOutput.f90
  • ate_and_time in gnu fortran
  • m_check in PrepareNetcdfOutput.f90
  • nf90_ functions in netcdf
• CALLED from:
  • TreeMig in TreeMig.f90

Definition at line 51 of file PrepareNetcdfOutput.f90.